Last updated: 2024-03-19

Checks: 2 0

Knit directory: ProtocolLabRotationSaezRodriguezGroup/

This reproducible R Markdown analysis was created with workflowr (version 1.7.1). The Checks tab describes the reproducibility checks that were applied when the results were created. The Past versions tab lists the development history.

R Markdown file: up-to-date

Great! Since the R Markdown file has been committed to the Git repository, you know the exact version of the code that produced these results.

Repository version: 35ce4f1

Great! You are using Git for version control. Tracking code development and connecting the code version to the results is critical for reproducibility.

The results in this page were generated with repository version 35ce4f1. See the Past versions tab to see a history of the changes made to the R Markdown and HTML files.

Note that you need to be careful to ensure that all relevant files for the analysis have been committed to Git prior to generating the results (you can use wflow_publish or wflow_git_commit). workflowr only checks the R Markdown file, but you know if there are other scripts or data files that it depends on. Below is the status of the Git repository when the results were generated: 


Ignored files:
    Ignored:    .Rhistory
    Ignored:    analysis/.Rhistory

Untracked files:
    Untracked:  10X_Visium_ACH005.tar.gz
    Untracked:  ACH005/
    Untracked:  analysis/10X_Visium_ACH005.tar.gz
    Untracked:  analysis/ACH005/
    Untracked:  analysis/hca_p14.rds
    Untracked:  bc_metadata.tsv
    Untracked:  data/10X_Visium_ACH005.tar.gz
    Untracked:  data/ACH005/
    Untracked:  data/bc_metadata.tsv
    Untracked:  data/hca_p14.rds
    Untracked:  data/imc_bc_optim_zoi.RDS
    Untracked:  data/omni_resource.csv
    Untracked:  hca_p14.rds
    Untracked:  imc_bc_optim_zoi.RDS
    Untracked:  omni_resource.csv
    Untracked:  omnipathr-log/
    Untracked:  result/
    Untracked:  results/

Note that any generated files, e.g. HTML, png, CSS, etc., are not included in this status report because it is ok for generated content to have uncommitted changes.

These are the previous versions of the repository in which changes were made to the R Markdown (analysis/index.Rmd) and HTML (docs/index.html) files. If you’ve configured a remote Git repository (see ?wflow_git_remote), click on the hyperlinks in the table below to view the files as they were in that past version.

File Version Author Date Message
Rmd 35ce4f1 leotenshii 2024-03-19 wflow_publish(c("analysis/MistyRStructuralAnalysisPipelineDOT.Rmd",
html 1e4a2af leotenshii 2024-03-17 Build site.
html ec66e86 leotenshii 2024-03-17 Build site.
html 36c6e22 leotenshii 2024-03-11 Build site.
Rmd e820555 leotenshii 2024-03-11 update index
html e820555 leotenshii 2024-03-11 update index
html 1e38c09 leotenshii 2024-03-11 Build site.
Rmd dd02155 leotenshii 2024-03-11 wflow_publish("analysis/index.Rmd")
Rmd 5cd450a leotenshii 2024-03-11 updating the website/github
html dd73c7f Leoni Zimmermann 2024-03-06 added index.html
Rmd 40be43c Leoni Zimmermann 2024-03-06 Start workflowr project.

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